MY PUBLICATION LIST
* = corresponding or co-corresponding author
+ = co-first author
π = open access version
π° = media coverage
π₯ = related video presentation
preprints
Kaiyuan L., Nicoli F., Al Shehimy S., Penocchio E.*, Di Noja S., Li Y., Bonfio C., Borsley S., Ragazzon G.*, “ Catalysis-driven active transport across a liquid membrane” ChemRxiv-2024-1kbcw (2024).
Penocchio E.*, Gu G., Albaugh A. & Gingrich R.T.*, β Power strokes in molecular motors: predictive, irrelevant, or somewhere in between?β ChemRxiv-2024-rjbdc-v2 (2024). π₯
in press
23.Β Penocchio E.*, Bachir A.+, Credi A., Astumian R.D.* & Ragazzon G.*, β Analysis of kinetic asymmetry in a multi-cycle reaction network establishes the principles for autonomous compartmentalized molecular ratchetsβ Chem (2024). π π°
2024
22.Β Yang Z., Wang X., Penocchio E.*, Ragazzon G.*, Chen X., Lu S., Zhou Y., Fu K., Liu Z., Cai Y., Yu X.*, Li X., Li X.*, Feng W. & Yuan L.*. “ Beyond Single-Cycle Autonomous Molecular Machines: Light-Powered Shuttling in Multi-Cycle Reaction Network”. Angew. Chem. Int. Ed. e202414072 (2024). π
21.Β Avanzini F., Bilancioni M., Cavina V., Dal Cengio S., Esposito M., Falasco G., Forastiere D., Freitas N., Garilli A., Harunari P. E., Lecomte V., Lazarescu A., Marehalli Srinivas S. G., Moslonka C., Neri I., Penocchio E., PiΓ±eros W. D., Polettini M., Raghu A., Raux P., Sekimoto K. & Soret A., β Methods and Conversations in (Post)Modern Thermodynamicsβ, SciPost Phys. Lect. Notes 80 (2024). π
2023
20.Β Sangchai T., Al Shehimy S.+, Penocchio E.* & Ragazzon G.*, β Artificial Molecular Ratchets: Tools Enabling Endergonic Processesβ Angew. Chem. Int. Ed. 62, e202309501 (2023). π
19.Β Binks L., Borsley S., Gingrich T.R., Leigh D.A.*, Penocchio E. & Roberts B.M.W., β The role of kinetic asymmetry and power strokes in an information ratchetβ, Chem 9, 2902-2917 (2023). π
18.Β Bilancioni M., Esposito M. & Penocchio E.*, “ A [3]-catenane non-autonomous molecular motor model: Geometric phase, no-pumping theorem, and energy transduction”, J. Chem. Phys. 158, 224104 (2023). π
17.Β Penocchio E.* & Ragazzon G.*, β Kinetic barrier diagrams to visualize and engineer molecular nonequilibrium systemsβ, Small, 2206188 (2023). π π₯
2022
16.Β Amano S., Esposito M., Kreidt E., Leigh D.A.*, Penocchio E.* & Roberts B.M.W., β Using catalysis to drive chemistry away from equilibrium: Relating kinetic asymmetry, power strokes and the Curtin-Hammett principle in Brownian ratchetsβ, J. Am. Chem. Soc. 144, 20153-20164 (2022). π
15.Β Penocchio E.*, Avanzini F. & Esposito M., β Information thermodynamics for deterministic chemical reaction networksβ, J. Chem. Phys. 157, 034110 (2022). π
14.Β CorrΓ S., TranfiΔ BakiΔ M., Groppi J., Silvi S., Penocchio E., Esposto M. & Credi A.*, β Kinetic and energetic insights in the dissipative non-equilibrium operation of an autonomous light-powered supramolecular pumpβ, Nat. Nanotechnol. 17, 746 (2022). π π°
13.Β Asnicar D., Penocchio E. & Frezzato D.*, β Sample size dependence of tagged molecule dynamics in steady-state networks with bimolecular reactions: Cycle times of a light-driven pumpβ, J. Chem. Phys. 156, 184116 (2022). π
12.Β Amano S., Esposito M., Kreidt E., Leigh D.A.*, Penocchio E.* & Roberts B.M.W., β Insights from an information thermodynamics analysis of a synthetic molecular motorβ, Nat. Chem. 14, 530-537 (2022). π
2021
11.Β Penocchio E.*, Rao R. & Esposito M., β Nonequilibrium thermodynamics of light-induced reactionsβ, J. Chem. Phys. 155, 114101 (2021). π
10.Β Avanzini F.*, Penocchio E., Falasco G. & Esposito M., β Nonequilibrium thermodynamics of non-ideal chemical reaction networksβ, J. Chem. Phys. 154, 094114 (2021). π
2019
9.Β Penocchio E., Rao R. & Esposito M.*, β Thermodynamic efficiency in dissipative chemistryβ, Nat. Commun. 10, 3865 (2019). π π° π°
8.Β Sabatino A., Penocchio E., Ragazzon G., Credi A.* & Frezzato D.*, “ Individual β molecule perspective analysis of chemical reaction networks: The case of a light β driven supramolecular pump”, Angew. Chem. Int. Ed. 131, 14479 (2019). π
7.Β Falasco G.*, Cossetto T., Penocchio E. & Esposito M., β Negative differential response in chemical reaction networksβ, New J. Phys. 21, 073005 (2019). π π°
2017
6.Β Mendolicchio M., Penocchio E., Tasinato N. & Barone V.*, β Development and implementation of advanced fitting methods for the calculation of accurate molecular structuresβ, J. Chem. Theory Comput. 13, 3060 (2017). π
2016
5.Β Penocchio E., Mendolicchio M., Tasinato N. & Barone V.*, β Structural features of the carbon-sulfur chemical bond: A semi- experimental perspectiveβ, Can. J. Chem. 94, 1065 (2016).
2015
4.Β Penocchio E., Piccardo M. & Barone V.*, β Semiexperimental equilibrium structures for building blocks of organic and biological molecules: The B2PLYP routeβ, J. Chem. Theory Comput. 11, 4689 (2015).
3.Β Barone V.*, Biczysko M., Bloino J., Cimino P., Penocchio E. & Puzzarini C., β CC/DFT route toward accurate structures and spectroscopic features for observed and elusive conformers of flexible molecules: Pyruvic acid as a case studyβ, J. Chem. Theory Comput. 11, 4342 (2015).
2.Β Piccardo M.,Penocchio E., Puzzarini C., Biczysko M. & Barone V.*, β Semi-experimental equilibrium structure determinations by employing B3LYP/SNSD anharmonic force fields: Validation and application to semirigid organic moleculesβ, J. Phys. Chem. A 119, 2058 (2015). π
2014
1.Β Puzzarini C.*, Penocchio E., Biczysko M. & Barone V.*, β Molecular structure and spectroscopic signatures of acrolein: Theory meets experimentβ, J. Phys. Chem. A 118, 6648 (2014). π
EXTRAS
My PhD thesis
Penocchio E., “ Thermodynamics of chemical engines: A chemical reaction network approach”, Unilu-University of Luxembourg, Luxembourg (2022). π₯
History of Science & Science Education
(in Italian, translations are provided for titles)
Visentin C. & Penocchio E., β Dal pH a Pareto: lβeclettismo di Lawrence J. Hendersonβ (βFrom pH to Pareto: the eclecticism of Lawrence J. Hendersonβ) Atti del XVII Convegno Nazionale di Storia e Fondamenti della Chimica edited by Marco Taddia, Roma, 10β12 Ottobre 2017; in Rendiconti della Accademia Nazionale delle Scienze detta dei XL, Memorie di Scienze Fisiche e Naturali , 135Β° (2017), Vol. XLI, Parte II, Tomo II, Roma 2018, pp. 125-134.
Penocchio E., βGiulio Natta, all’epoca dei fatti. Un inserto storico nei programmi di chimicaβ (βGiulio Natta, at the time of the events. A historical insert in chemistry programsβ), La Chimica nella Scuola 4, 61 (2017).